筆者環境
機種 : RADXA Rock3A 8GB
OS : Ubuntu Server 20.04 (Radxa build ver 20221101-0101)
TL;DR
とりあえずこれしたら治る(pythonのバージョンは合わせてね)
sudo apt install libgdal-dev python3.x-dev gcc g++
具体的な解決ロードマップ
具体的なエラー内容
以下のようなエラーが発生した。
Collecting fiona>=1.8
Using cached Fiona-1.8.22.tar.gz (1.4 MB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [2 lines of output]
Failed to get options via gdal-config: [Errno 2] No such file or directory: 'gdal-config'
A GDAL API version must be specified. Provide a path to gdal-config using a GDAL_CONFIG environment variable or use a GDAL_VERSION environment variable.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
または
Collecting fiona>=1.8
Using cached Fiona-1.8.22.tar.gz (1.4 MB)
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kkrltjtl/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kkrltjtl/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-kkrltjtl/fiona/pip-egg-info
cwd: /tmp/pip-install-kkrltjtl/fiona/
Complete output (2 lines):
Failed to get options via gdal-config: [Errno 2] No such file or directory: 'gdal-config'
A GDAL API version must be specified. Provide a path to gdal-config using a GDAL_CONFIG environment variable or use a GDAL_VERSION environment variable.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
対処方法
以下のパッケージをダウンロードする
- libgdal-dev
sudo apt install libgdal-dev
上記の対処時に以下のエラーが発生した場合
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-97kg8yu7
cwd: /tmp/pip-install-e2wulyso/fiona/
Complete output (57 lines):
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'metadata_version'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_python'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_external'
warnings.warn(msg)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.8
creating build/lib.linux-aarch64-3.8/fiona
copying ./fiona/inspector.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/collection.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/io.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/env.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/crs.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/_loading.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/rfc3339.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/transform.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/vfs.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/path.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/_show_versions.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/errors.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/__init__.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/session.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/drvsupport.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/compat.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/logutils.py -> build/lib.linux-aarch64-3.8/fiona
creating build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/rm.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/distrib.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/env.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/dump.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/calc.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/info.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/load.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/main.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/collect.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/helpers.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/insp.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/options.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/bounds.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/cat.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/__init__.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/ls.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/filter.py -> build/lib.linux-aarch64-3.8/fiona/fio
running build_ext
building 'fiona.schema' extension
creating build/temp.linux-aarch64-3.8
creating build/temp.linux-aarch64-3.8/fiona
aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/gdal -I/usr/include/python3.8 -c fiona/schema.c -o build/temp.linux-aarch64-3.8/fiona/schema.o
fiona/schema.c:30:10: fatal error: Python.h: No such file or directory
30 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
error: command 'aarch64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for fiona
Running setup.py clean for fiona
Successfully built shapely
Failed to build fiona
Installing collected packages: pyproj, shapely, python-dateutil, pytz, numpy, pandas, attrs, click, click-plugins, cligj, munch, fiona, pyparsing, packaging, geopandas
WARNING: The script pyproj is installed in '/home/rock/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts f2py, f2py3 and f2py3.8 are installed in '/home/rock/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Running setup.py install for fiona ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-6hbqvbac/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/rock/.local/include/python3.8/fiona
cwd: /tmp/pip-install-e2wulyso/fiona/
Complete output (19 lines):
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'metadata_version'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_python'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_external'
warnings.warn(msg)
running install
running build
running build_py
running build_ext
building 'fiona.schema' extension
creating build/temp.linux-aarch64-3.8
creating build/temp.linux-aarch64-3.8/fiona
aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/gdal -I/usr/include/python3.8 -c fiona/schema.c -o build/temp.linux-aarch64-3.8/fiona/schema.o
fiona/schema.c:30:10: fatal error: Python.h: No such file or directory
30 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
error: command 'aarch64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-e2wulyso/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-6hbqvbac/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/rock/.local/include/python3.8/fiona Check the logs for full command output.
まず、Pythonのバージョンを確認する
python3 -V
Python 3.8.10
そのバージョンのdevをインストールする
sudo apt install python3.x-dev
それでもエラーが治らない時
Building wheels for collected packages: fiona
Building wheel for fiona (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-la1nq32v
cwd: /tmp/pip-install-kbv395hd/fiona/
Complete output (58 lines):
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'metadata_version'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_python'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_external'
warnings.warn(msg)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.8
creating build/lib.linux-aarch64-3.8/fiona
copying ./fiona/inspector.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/collection.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/io.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/env.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/crs.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/_loading.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/rfc3339.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/transform.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/vfs.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/path.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/_show_versions.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/errors.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/__init__.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/session.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/drvsupport.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/compat.py -> build/lib.linux-aarch64-3.8/fiona
copying ./fiona/logutils.py -> build/lib.linux-aarch64-3.8/fiona
creating build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/rm.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/distrib.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/env.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/dump.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/calc.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/info.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/load.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/main.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/collect.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/helpers.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/insp.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/options.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/bounds.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/cat.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/__init__.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/ls.py -> build/lib.linux-aarch64-3.8/fiona/fio
copying ./fiona/fio/filter.py -> build/lib.linux-aarch64-3.8/fiona/fio
running build_ext
building 'fiona.schema' extension
creating build/temp.linux-aarch64-3.8
creating build/temp.linux-aarch64-3.8/fiona
aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/gdal -I/usr/include/python3.8 -c fiona/schema.c -o build/temp.linux-aarch64-3.8/fiona/schema.o
aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-3.8/fiona/schema.o -lgdal -o build/lib.linux-aarch64-3.8/fiona/schema.cpython-38-aarch64-linux-gnu.so
building 'fiona._transform' extension
aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/gdal -I/usr/include/python3.8 -c fiona/_transform.cpp -o build/temp.linux-aarch64-3.8/fiona/_transform.o -std=c++11
aarch64-linux-gnu-gcc: fatal error: cannot execute ‘cc1plus’: execvp: No such file or directory
compilation terminated.
error: command 'aarch64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for fiona
Running setup.py clean for fiona
Failed to build fiona
Installing collected packages: pyparsing, packaging, fiona, geopandas
Running setup.py install for fiona ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-tshd5ohe/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/rock/.local/include/python3.8/fiona
cwd: /tmp/pip-install-kbv395hd/fiona/
Complete output (17 lines):
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'metadata_version'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_python'
warnings.warn(msg)
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'requires_external'
warnings.warn(msg)
running install
running build
running build_py
running build_ext
building 'fiona._transform' extension
creating build/temp.linux-aarch64-3.8
creating build/temp.linux-aarch64-3.8/fiona
aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/gdal -I/usr/include/python3.8 -c fiona/_transform.cpp -o build/temp.linux-aarch64-3.8/fiona/_transform.o -std=c++11
aarch64-linux-gnu-gcc: fatal error: cannot execute ‘cc1plus’: execvp: No such file or directory
compilation terminated.
error: command 'aarch64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kbv395hd/fiona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-tshd5ohe/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/rock/.local/include/python3.8/fiona Check the logs for full command output.
上記のようにerror: command 'aarch64-linux-gnu-gcc' failed with exit status 1とか言われた時はg++をインストールする。
sudo apt install g++
以上
